Texas A&M University Department of Biology
Current Graduate Students
Name Phone E-Mail Lab Research
Abdallah, Rehab 845-1129 rabdallah@bio.tamu.edu Holzenberg  
Agrawal, Parul 845-0382 pagrwal@bio.tamu.edu Hardin

The goal of my project is to identify and characterize phosphatases that function within the Drosophila circadian clock.

Aldrich, John 845-6593 jaldrich@bio.tamu.edu Maggert I have two ongoing research projects. The first concerns the regulation of transcription by nuclear scaffold proteins. The second deals with the regulation and phenotypic consequences of rDNA copy number instability in Drosophila.
Banerjee, Swayoma 845-7709 sbanerjee@bio.tamu.edu Versaw  
Beagle, Sarah 458-5565 sbeagle@bio.tamu.edu Lockless Identification of functionally coupled networks of amino acid residues in prokaryotes.
Bennett, Lindsay 847-9239 lbennett@bio.tamu.edu Bell-Pedersen An organism's internal clock coordinates gene expression, physiology and behavior to best adapt to daily changes in its external environment.  I study how the MAK-1 mitogen activated protein (MAP) kinase receives signals from the clock and drives daily rhythms in the fungus Neurospora crassa.  Both the clock and this MAP kinase pathway are conserved in fungus and humans, and several disease states (seasonal defective disorder, depression, heart disease and cancer) involve both mechanisms, but how they are linked is unclear.  Thus, my studies will help define the link between the clock, the MAK-1 pathway and human disease.
Boltz, Kara 862-2341 kboltz@bio.tamu.edu Shippen/McKnight

I am characterizing the function and mechanism of the Arabidopsis CST telomere capping complex.  I am particularly interested in the role of CST and telomeres with the DNA damage response pathways and with DNA replication.

Boyle, Terrance 845-3422 tboyle@bio.tamu.edu Wicksten

I'm broadly interested in Invertebrate Ecology and Invasive Species. My current research focuses on the effect of local adaptations on the invasibility of the crab, Rhithropanopeus harrisii, in inland reservoirs.

Caster, Stephen 847-9239 scaster@bio.tamu.edu Bell-Pedersen

I am currently investigating circadian regulation of translation through a serine/threonine protein kinase RCK-2 in Neurospora crassa.

Castillo, Kathrina 845-0663 kcastillo@bio.tamu.edu Thomas Functional analysis of a putative G protein-coupled receptor, we designated as PLG1 (PTH11-like GPCR1) in the rice blast fungus, Magnaporthe grisea
Chen, Xin 458-0896 xchen@bio.tamu.edu Garcia I am studying the sex-specific morphological and functional  alterations of a specialized muscle, the anal depressor, in adult male C.elegans.
Correa, Paola 458-0896 pcorrea@bio.tamu.edu Garcia I am interested in novel signaling pathways implicated in dopamine-dependent modulation of cholinergic-regulated circuits. In search of this evidence, I am studying a specific male mating sub-step of C. elegans, spicule insertion, which models a DA-dependent motor feedback circuit.
Cox, Nehemiah 458-5750 ncox@bio.tamu.edu Gomer Our lab focuses on scar tissue formation and how abnormalities in this process can lead to diseases such a congestive heart disease and pulmonary fibrosis. I study a protein called serum amyloid p that is one of the major regulators of immune cells in the formation of scar tissues. I hope to elucidate the exact role of this protein in regulating immune cells.
Cui, Rongfeng   rcui@bio.tamu.edu Rosenthal I'm currently working on the influence of early learning experience on mate choice in two swordtail species Xiphophorus malinche and X. birchmanni. I'm also trying to characterize courtship pheromones in these two species.
Dekhang, Rigzin 847-9239 rdekhang@bio.tamu.edu Bell-Pedersen I am currently working on the characterization of circadian output pathways regulated by a transcription factor ADV-1 in Neurospora crassa
Delclos, Pablo   pdelclos@bio.tamu.edu Rosenthal I am currently interested in the effects of disturbance, predator presence and nutrient quantity on sexual selection and population structure in Xiphophorus swordtails.
Edelstein, Laura 845-4342 ledelstein@bio.tamu.edu Jones  
Escano, Jerome 845-2446 jescano@bio.tamu.edu Smith I work on understanding mechanism of synthesis of a class of peptide bacteriocins called lantibiotics. Specifically on the role of the leader peptide of the lantibiotic, mutacin 1140, produced by Streptococcus mutans JH1140.
Flanagan, Sarah 845-4342 sflanagan@bio.tamu.edu Jones

I am interested in sexual selection and mating strategies in Syngnathid species, in particular the Gulf Pipefish. 

Francis, Michael 845-6233 mfrancis@bio.tamu.edu Sorg I am analyzing factors that contribute to C. difficile spore germination.
Giresi, Melissa   mgiresi@bio.tamu.edu Rosenthal

Conservation genetics of exploited marine and freshwater fishes, Phylogenetics and phylogeography of marine and freshwater fishes , Ecology of marine and freshwater fishes,
Genomics of fishes and other vertebrates

Goldsmith, Charles 847-9239 cgoldsmith@bio.tamu.edu Bell-Pedersen

Circadian clocks ensure that the biology of an organism is in proper synchrony with its environment.  I am interested in understanding how circadian clocks regulate the expression of genes at different times of day.  Specifically, I am investigating the clock regulation of signaling pathways in the filamentous fungus Neurospora crassa. 

Gorton, Mary 845-0925 mgorton@bio.tamu.edu Criscione

I investigate the host-parasite ecology, phylogeography, and impact of wetland habitat alteration on the fine-scale population structure of Ochetosoma aniarum, a trematode that infects water snakes and pit vipers.

Gou, YunZi 845-4302 ygou@bio.tamu.edu Riley  
Gunawardhana, Kushan 845-0382 kgunawardhana@bio.tamu.edu Hardin

I have generated a vri transgene that rescues embryonic lethality in vri null mutants. This transgene was engineered to eliminate vri function either inducibly in adults or permanently in clock cells, thus bypassing embryonic lethality and producing vri mutant adults. My next goal is to do molecular and behavioral experiments on vri mutant adults to determine the role that vri plays within the Drosophila circadian clock. 

Guo, Xiaoyan 458-0896 xguo@bio.tamu.edu Garcia

I am currently working on the molecular mechanism of maintaining C. elegans mating behavior during aging.

Gyawali, Rachana 845-7259 rgyawali@bio.tamu.edu Lin

I am currently working on identifying the factors that determine uniparental mitochondrial DNA inheritance in fungal pathogen Cryptococcus neoformans.

Hawkins, Angela 845-2683 ahawkins@bio.tamu.edu Pepper

I am investigating the mechanisms by which Caulanthus amplexicaulis var. barbarae (CAB), a serpentine endemic plant, has not only adapted to, but thrives in such soils.  By comparing CAB to its sister, non-serpentine taxon Caulanthus amplexicaulis var. amplexicaulis, (CAA) I hope to elucidate the genetic and phenotypic variation that underlies adaptation to serpentine environments. 

Herlihy, Sarah 458-5750 sherlihy@bio.tamu.edu Gomer

I’m working to elucidate a signal transduction pathway that inhibits the proliferation of cells in Dictyostelium. I’m also working on a mechanism of chemotaxis in human neutrophils.

Ibarra, Oneida   oibarra@bio.tamu.edu Bell Pedersen  
Jani, Sneha 845-1249 sjani@bio.tamu.edu Manson

I am studying the interaction between the E.coli chemoreceptor Tsr and the binding protein LsrB. This interaction is interesting because LsrB binds the quorum sensing molecule Autoinducer-2 (AI-2) and then interacts with Tsr to elicit an attractant response. It is the only known binding protein that interacts with Tsr. We are also investigating the ecological impact of AI-2 chemotaxis.

Ji, Wangming   wji@bio.tamu.edu McKnight  
Jiang, Xue   xjiang@bio.tamu.edu Qin  
Jofre-Rodriguez, Gaston   gjofre@bio.tamu.edu Rosenthal  
Kantarci, Husniye 845-4302 hkantarci@bio.tamu.edu Riley I am studying the patterning of the inner ear in zebrafish. My projects focus on understanding the development of stato-acoustic neurons that innervate sensory hair cells of the ear and mediate hearing and balance
Kasl, Emily 845-0925 ekasl@bio.tamu.edu Criscione

My current work uses a molecular phylogenetic and population genetic approach to investigate the evolutionary patterns of life cycle complexity (number and type of host species used) in Alloglossidium, a genus of trematodes found in catfish, crustaceans, and leeches.

Keyhanian, Katayoon 458-1422 kkeyhanian@bio.tamu.edu Ryan

The general focus of research in our lab is Nuclear pore complex (NPC) assembly during interphase which we use Saccharomyces mutants with NPC assembly defects to investigate assembly. I am looking at the role of proteosome function in NPC assembly.

Kim, SamMoon 862-3109 skim@bio.tamu.edu Earnest I am interested in the regulation of mammalian circadian clock on nutrient metabolism
Kumar, Krishna 845-1625 krkumar@bio.tamu.edu Griffing  
Kupara, Kudakwashe 845-6593 kkupara@bio.tamu.edu Maggert

Although research in the past decade has shown a structure-function relationship between chromosome looping and gene expression, very little is known about the dynamic mechanism of the specific nuclear proteins. My primary objective is to understand how proteins such as Scaffold Attachment Factor B, which is implicated in nuclear scaffolding, regulate gene expression. I use Drosophila because of the cytological, genetic, molecular and bioinformatics tools available for high-resolution imaging, rapid creation of mutants, precise genome manipulation and accurate nucleic acid analysis.

Li, Huinan (Marcus) 458-5563 hli@bio.tamu.edu Harlow

I am focusing on looking at the luminal structure of isolated synaptic vesicles at chemical synapses in mammalian brain tissue, by high-resolution electron microscopy.

Liu, Shian 458-5565 sliu@bio.tamu.edu Lockless I'm interested in the coupled network of amino acid residues within a single protein. The current work of mine is to understand the mechanism of inactivation and selectivity for potassium channels.
Liu, Tianxin (Scarlett) 845-0382 tliu@bio.tamu.edu Hardin

I am currently working on two projects: one is to investigate on the location and function of CRY in oscillator cells in CNS of Drosophila; the other is to develop Drosophila cell lines by activation of oncogenes Rasv12

Lugena, Aldrin 845-7784 alugena@bio.tamu.edu Lekven In fungi, plants and animals Argonaute proteins connect small RNAs with development in yet-to-be-determined ways.  In Neurospora, the Argonaute SMS-2 protein is involved in the control of early sexual development and in Meiotic Silencing, a meiotic-specific mechanism of genome defense.  My work is directed at understanding the different classes of small RNAs that are bound by SMS-2 and at determining how these small RNAs participate and control both early sexual development and Meiotic Silencing.
Mahadevaraju, Sharvani 845-6747 sharvani@bio.tamu.edu Erickson

XX embryos develop as females, while XY embryos develop as males in Drosophila. The target of the X chromosome signal is the gene Sex-lethal (Sxl) specifically its establishment promoter Sxlpe that comes ON only in females in response to the two doses of X-linked activators. We propose that X-dose-sensitivity is achieved via a signal amplification mechanism and testing if runt an X-linked transcription factor acts as a positive regulator of Sxlpe by antagonizing the repressor function of a maternally supplied co-repressor Groucho.

Mandal, Sabyassachi 845-6749 smandal@bio.tamu.edu McKnight  
Martinez, Allyson 845-2984 amartinez@bio.tamu.edu Sachs

Understanding the molecular basis for amino acid-dependent stalling of ribosomes by nascent regulatory peptides in Escherichia coli.

Mukherjee, Pallavi 845-7709 pmukherjee@bio.tamu.edu Versaw

My work focuses on understanding the physiological roles and biochemical properties of two Pi transport proteins that localize to the chloroplast inner envelope membrane. I am also developing a series of fluorescent sensor proteins that will enable evaluation of Pi levels in different compartments of live cells.

Nsa, Inmade 847-9239 insa@bio.tamu.edu Bell-Pedersen In the Bell-Pedersen lab we are studying how the circadian clock is regulated in Neurospora crassa.
Ojha, Nikita 847-9239 nojha@bio.tamu.edu Bell-Pedersen

I am currently working on tagging Histidine Kinases in order to investigate their role in clock regulation in Neurospora crassa. 

Park, Jason 845-2984 jpark@bio.tamu.edu Benedik

The enzyme Cyanide dihydratase presents a attractive strategy for the bioremediation of cyanide waste. The activity and stability of this enzyme are related to the formation of a large spiral shaped homo-oligomer. My work focuses on identifying the contributing residues and surfaces responsible for the oligomer formation.

Powell, Daniel   dpowell@bio.tamu.edu Rosenthal  
Rajendren, Jayashre 845-6747 jrajendren@bio.tamu.edu Erickson I am studying how the sex-determining gene sex lethal is controlled differentially during sex differentiation in Drosophila.
Ramsey, Michelle 845-3655 mramsey@bio.tamu.edu Perkins

The planar cell polarity (PCP) pathway patterns cilia. Photoreceptors have a connecting cilium attaching the light-sensitive outer segment to the cell body. The purpose of my research is to determine if connecting cilia are polarized by the PCP pathway.

Ravichandran, Akshaya 845-2446 aravichandran@bio.tamu.edu Smith My research focuses on occidiofungin, a non-ribosomal peptide possessing antifungal properties. I am currently working on isolating naturally occurring variants of occidiofungin and understanding its mechanism of action
Richardson, Jarrett 862-2819 jrichardson@bio.tamu.edu Zoran

A diverse number of organisms exhibit transient electrical coupling before developing chemical synapses in their mature nervous system. I am investigating how transient formation of electrical synapses regulates connectivity in neural networks. 

Rose, Emily 845-4342 erose@bio.tamu.edu Jones I study evolutionary and molecular ecology of syngnathid fishes with a focus on anthropogenic impacts on their environment.
Saleem, Sehresh 845-6626 ssaleem@bio.tamu.edu Carney I work on determining the effect of experience-based reproductive behavioral plasticity in Drosophila melanogaster
Schultzhaus, Janna 845-6626 jschultzhaus@bio.tamu.edu Carney

I am interested in how the genetics of an organism can affect its behavior. My research focuses on how different genes influence mating behavior in Drosophila melanogaster. By changing the expression of genes I am able to discern whether differences in male courtship patterns occur, and whether these genes are important for Drosophila behavior.

Seely, Andrew 845-1249 aseely@bio.tamu.edu Manson

Autoinducer-2 (AI-2) is a general quorum sensing molecule involved in biofilm formation and regulation in many bacteria.  My current work focuses on characterizing the interaction between the AI-2 binding protein (LsrB) and its chemoreceptor (Tsr) in Escherichia coli.  This interaction is critical during the attraction of E. coli to gradients of AI-2 produced during quorum sensing.

Shaik, Rahamthulla 845-1129 rshaik@bio.tamu.edu Holzenberg  
Sherlekar, Amrita 845-3386 asherlekar@bio.tamu.edu R. Lints Neural circuits rapidly modulate complex behaviors in response to the moment-to-moment changes in the environment. The molecular mechanisms underlying this neural organization are unknown. I am currently trying to map the backing circuitry of the C. elegans male mating behavior to understand how sensory inputs are converted into complex motor outputs.
Silva, David 845-5905 davidsilva@bio.tamu.edu Sachs  
Silva, Nadisha   nsilva@bio.tamu.edu Rosenthal and Mateos Population dynamics and functional genomics of Spiroplasma infection in DrosophilaSpiroplasma, belongs to a group of endosymbiotic bacteria that are maternally inherited. 65-70% of insect species are infected by one or more inherited bacteria, which are known to affect host reproduction, nutrient uptake, resistance to pathogens and parasite etc. 
Smarsh, Grace 845-3454 gsmarsh@bio.tamu.edu Smotherman Little is known about the function and evolution of singing in bats.  I am doing a comparative study of two African singing bats, Lavia frons, the yellow-winged bat, and Cardioderma cor, the heart-nosed bat, to gain insight into the function of songs and assess how differences in social complexity may influence the evolution of vocal complexity.  Dr. Grant (WFSC) and I have created a spatially-explicit, individual-based model to quantifiably compare social interaction and vocalization usage.
Smith, Victoria 845-7753 vsmith@bio.tamu.edu MacKenzie My research is aimed at understanding molecular and hormonal mechanisms of female reproductive behavior in swordtail fish. Currently, I am working on a project investigating the relationship between individual glucocorticoid levels and willingness to mate.
Squire, Mattie   msquire@bio.tamu.edu Rosenthal

My research focuses on exploring the possible mechanisms of post-copulatory sexual selection in the hybrid system formed between the swordtail fish, Xiphophorus birchmanni and Xiphophorus malinche

Sterling, Rachel 458-5750 rsterling@bio.tamu.edu Gomer  
Suescun, Ana 862-4376 asuescun@bio.tamu.edu Aramayo During sexual development, Neurospora crassa has the ability to recognize unpaired copies of DNA and trigger silencing of those genes located in the unpaired region through an RNAi mechanism called Meiotic Silencing. The main aim in the lab is to understand how this phenomenon occurs. Previously, we identified gene products that are involved in Meiotic Silencing. Currently, using biochemical and genetic approaches I am investigating what protein interactions are involved in silencing of genes present in unpaired copies during meiosis.
Sun, Yi 845-6747 ysun@bio.tamu.edu Erickson

I am currently trying to add FRT site into a plasmid containing vri gene.

Sung, MinWoo 845-1129 msung@bio.tamu.edu Holzenberg  
Talley, Zach 845-1249 ztalley@bio.tamu.edu Manson  
Tarin, Daniel 845-4308 dtarin@bio.tamu.edu Manhart  
To, Kam 845-2853 kto@bio.tamu.edu Young S105, which controls lysis by formation of large membrane holes at a programmed time, has been subjected to intensive genetic, cell biological and biochemical analysis.  Although Y is not related to S105 in terms of sequence, genetic and molecular analysis of Y is justified in order to determine how many of S105’s striking features are essential for holin function.
Trent, Samantha 845-3454 strent@bio.tamu.edu Smotherman  
Triff, Karen   ktriff@bio.tamu.edu Chapkin/Zoran The goal of my research is to determine the effect of colon cancer progression on histone modifications which regulate gene expression.  
Additionally, I am studying the in-vivo, chemoprotective, synergistic effect of nutritional derivatives, e.g.,  DHA (an anti-inflammatory fatty acid found in fish oil), and butyrate (a histone deacetylase inhibitor derived from fermentable fiber) on intestinal chromatin modifications.
Wang, Chenyu (Jenny) 845-0663 cwang@bio.tamu.edu Thomas I'm working one membrane protein encoding gene in Magnaporthe grisea, and its relevant role in the rice blast formation signaling pathway.
Wang, Qian (Angie)   qwang@bio.tamu.edu    
Ward, Matthew 845-3212 mward@bio.tamu.edu T. Lints

I study the vocal ontogeny of northern mockingbirds raised in captivity.  My focus is on what role social inputs play  in repertoire development and syntactical organization.

Wedemeyer, Katie 862-6420 kwedemeyer@bio.tamu.edu Bernardo  
Wei, Jiajie 845-5905 jwei@bio.tamu.edu Sachs Understanding the mechanisms by which upstream open reading frames (uORFs) control gene expression
Whitaker, Gregory 845-1249 gwhitaker@bio.tamu.edu Manson Escherichia coli exhibits chemotaxis toward the catecholamine hormone norephinephrine (NE). NE is secreted into the gastrointestinal (GI) tract as part of the stress response. We are investigating the possibility that NE chemotaxis may enhance the virulence of intestinal bacteria by guiding them to the sites at which they colonize the epithelium of the GI tract.
Whitaker, Thad 845-3212 dwhitaker@bio.tamu.edu T. Lints  
White, Michael 458-5750 mwhite@bio.tamu.edu Gomer My work focuses on the proliferation of cancer cells and on differentiation of wound healing cells. Our lab is focused on investigating wound healing and tissue size regulation.
Whitener, Amy 845-7784 awhitener@bio.tamu.edu Lekven

I examine the timing and mechanism of Wnt signaling’s role in the patterning and formation of the midbrain hindbrain boundary.  The MHB is a signaling center that patterns the tectum and cerebellum.

Wilkes, Allison 845-7753 awilkes@bio.tamu.edu MacKenzie

I am currently working on the role of iodine and thyroid stimulating hormone on thyroid tissue in red drum.  I use high resolution PET/CT on fish injected with radioactive iodine to obtain three-dimensional images of fish anatomy, visualize dispersed thyroid tissue and quantify iodine uptake. 

Williams, Kristine 845-3422 kwilliams@bio.tamu.edu Wicksten  
Young, Carla 845-2683 cyoung@bio.tamu.edu Pepper

Currently, I am identifying genes that regulate photoperiodic flowering in Cotton.  I am using Roche 454 amplicon pyrosequencing to identify orthologs, paralogs and SNPs of candidate genes in diploid and tetraploid Cottons (Gossypium spp.)

Zhai, Bing 845-7259 bzhai@bio.tamu.edu Lin

I focus on the host-pathogen interactions during the infection caused by Cryptococcus neoformans. I also investigate on novel antifungal drugs and the underlying mechanisms.

Zheng, Zhichao (Ivy) 458-5750 zzheng@bio.tamu.edu Gomer

I work on the interaction between fibroblasts and immune system cells in order to find ways to reduce fibrosis.

Zhou, Jian 845-0382 jzhou@bio.tamu.edu Hardin

The function of clockwork orange (cwo) in Drosophila circadian clock and specifically how CWO contributes to transcriptional rhythms that keep circadian time.

Department of Biology, Texas A&M
Area Code (979)

 

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